Typhoon Morakot lashed Taiwan and produced copious amounts of precipitation in 2009. From the point view of hydrological statistics, the impact of the precipitation from typhoon Morakot using a frequency analysis can be analyzed and discussed. The frequency curve, which was fitted mathematically to historical observed data, can be used to estimate the probability of exceedance for runoff events of a certain magnitude. The study integrates frequency analysis and spatial analysis to assess the effect of Typhoon Morakot event on rainfall frequency in the Gaoping River basin of southern Taiwan. First, extreme rainfall data are collected at sixteen stations for durations of 1, 3, 6, 12, and 24 hours and then an appropriate probability distribution was selected to analyze the impact of the extreme hydrological event. Spatial rainfall patterns for a return period of 200-yr with 24-hr duration with and without Typhoon Morakot are estimated. Results show that the rainfall amount is significantly different with long duration with and without the event for frequency analysis. Furthermore, spatial analysis shows that extreme rainfall for a return period of 200-yr is highly dependent on topography and is smaller in the southwest than that in the east. The results not only demonstrate the distinct effect of Typhoon Morakot on frequency analysis, but also could provide reference in future planning of hydrological engineering.