We used satellite data, typhoon-resolving atmospheric forcing and a data assimilating ocean model, the East Asian Seas Nowcast/Forecast System (EASNFS), to investigate circulation and three upwelling regions perturbed by tides and Typhoon Fanapi (2010) in the seas around Taiwan. The three upwelling areas located off northeast Taiwan, off southeast China and over the Penghu Channel off southwest Taiwan are normally limited in expanse before Fanapi. The tidal currents enhance all three. To cope with typhoon strength atmospheric forcing, we applied typhoon-resolving Weather Research and Forecasting (WRF) model wind fields that significantly enhanced Fanapi-induced upwelling. Approaching Taiwan, Fanapi induces a cold wake spreading preferably on the right side of the essentially westward running track in the western Pacific. The three upwelling areas in the East China Sea and Taiwan Strait subsequently become expansive as Fanapi approaches and enters the Taiwan Strait. The mechanisms leading to normal or Fanapi-perturbed upwelling and circulation in seas around Taiwan, especially the latter two mentioned above, are suggested. In essence, Fanapi disrupts circulation in the Taiwan Strait, and also the Taiwan Strait outflow entering the East China Sea, leading to expanded upwelling areas. We also suggest that high-resolution wind and tides application is essential for the upwelling modeling study and also the general circulation in the region with and without typhoons.